J3_5DGF_074
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 5DGF|1|5|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DGF_074 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.0686
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97456.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5DGF|1|5|C|185
5DGF|1|5|U|186
5DGF|1|5|A|187
5DGF|1|5|U|188
5DGF|1|5|G|189
*
5DGF|1|5|C|205
5DGF|1|5|G|206
5DGF|1|5|U|207
5DGF|1|5|C|208
5DGF|1|5|A|209
5DGF|1|5|U|210
5DGF|1|5|A|211
5DGF|1|5|G|212
5DGF|1|5|A|213
5DGF|1|5|G|214
*
5DGF|1|5|C|226
5DGF|1|5|G|227
5DGF|1|5|U|228
5DGF|1|5|G|229
5DGF|1|5|U|230
5DGF|1|5|G|231
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l4
- 60S ribosomal protein L4-A
- Chain n6
- 60S ribosomal protein L26-A
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