J3_5DGF_082
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUGU*ACUCUUUG*CAU
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DGF_082 not in the Motif Atlas
- Homologous match to J3_8P9A_070
- Geometric discrepancy: 0.2315
- The information below is about J3_8P9A_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69466.1
- Basepair signature
- cWW-tSH-F-cWW-F-F-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5DGF|1|6|A|213
5DGF|1|6|G|214
5DGF|1|6|A|215
5DGF|1|6|U|216
5DGF|1|6|A|217
5DGF|1|6|A|218
5DGF|1|6|A|219
5DGF|1|6|A|220
5DGF|1|6|A|221
5DGF|1|6|A|222
5DGF|1|6|U|223
5DGF|1|6|C|224
5DGF|1|6|A|225
5DGF|1|6|A|226
5DGF|1|6|U|227
5DGF|1|6|G|228
5DGF|1|6|U|229
*
5DGF|1|6|A|236
5DGF|1|6|C|237
5DGF|1|6|U|238
5DGF|1|6|C|239
5DGF|1|6|U|240
5DGF|1|6|U|241
5DGF|1|6|U|242
5DGF|1|6|G|243
*
5DGF|1|6|C|250
5DGF|1|6|A|251
5DGF|1|6|U|252
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s6
- 40S ribosomal protein S6-A
- Chain s8
- 40S ribosomal protein S8-A
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