J3_8P9A_070

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAUAAAAAAUCAAUGU*ACUCUUUG*CAU

Length

28 nucleotides

Bulged bases

8P9A|1|sR|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69466.1

Basepair signature

cWW-tSH-F-cWW-F-F-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8P9A|1|sR|A|213
8P9A|1|sR|G|214
8P9A|1|sR|A|215
8P9A|1|sR|U|216
8P9A|1|sR|A|217
8P9A|1|sR|A|218
8P9A|1|sR|A|219
8P9A|1|sR|A|220
8P9A|1|sR|A|221
8P9A|1|sR|A|222
8P9A|1|sR|U|223
8P9A|1|sR|C|224
8P9A|1|sR|A|225
8P9A|1|sR|A|226
8P9A|1|sR|U|227
8P9A|1|sR|G|228
8P9A|1|sR|U|229
*
8P9A|1|sR|A|236
8P9A|1|sR|C|237
8P9A|1|sR|U|238
8P9A|1|sR|C|239
8P9A|1|sR|U|240
8P9A|1|sR|U|241
8P9A|1|sR|U|242
8P9A|1|sR|G|243
*
8P9A|1|sR|C|250
8P9A|1|sR|A|251
8P9A|1|sR|U|252

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain s4

40S ribosomal protein S4-A

Chain s6

40S ribosomal protein S6-A

Chain s8

40S ribosomal protein S8-A