J3_5DGV_009
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 5DGV|1|1|U|1840, 5DGV|1|1|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DGV_009 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.049
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5DGV|1|1|G|1488
5DGV|1|1|A|1489
5DGV|1|1|A|1490
5DGV|1|1|A|1491
*
5DGV|1|1|U|1837
5DGV|1|1|G|1838
5DGV|1|1|A|1839
5DGV|1|1|U|1840
5DGV|1|1|A|1841
5DGV|1|1|A|1842
5DGV|1|1|C|1843
*
5DGV|1|1|G|1852
5DGV|1|1|U|1853
5DGV|1|1|C|1854
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain O4
- 60S ribosomal protein L34-A
- Chain O7
- 60S ribosomal protein L37-A
- Chain O9
- 60S ribosomal protein L39
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