J3_5DGV_021

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DGV_021 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1105

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5DGV|1|2|C|1161
5DGV|1|2|C|1162
5DGV|1|2|A|1163
5DGV|1|2|G|1164
*
5DGV|1|2|C|1581
5DGV|1|2|U|1582
5DGV|1|2|A|1583
5DGV|1|2|G|1584
5DGV|1|2|U|1585
5DGV|1|2|A|1586
5DGV|1|2|A|1587
*
5DGV|1|2|U|1609
5DGV|1|2|G|1610
5DGV|1|2|A|1611
5DGV|1|2|U|1612
5DGV|1|2|U|1613
5DGV|1|2|A|1614
5DGV|1|2|C|1615
5DGV|1|2|G|1616

Current chains

Chain 2

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain D8

40S ribosomal protein S28-A

Chain S5

40S ribosomal protein S5