J3_5DGV_048
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAG*CAG*UCGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DGV_048 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.0669
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5DGV|1|6|A|760
5DGV|1|6|G|761
5DGV|1|6|A|762
5DGV|1|6|G|763
*
5DGV|1|6|C|773
5DGV|1|6|A|774
5DGV|1|6|G|775
*
5DGV|1|6|U|785
5DGV|1|6|C|786
5DGV|1|6|G|787
5DGV|1|6|A|788
5DGV|1|6|A|789
5DGV|1|6|U|790
Current chains
- Chain 6
- Saccharomyces cerevisiae S288c RDN37-1 miscRNA
Nearby chains
- Chain d4
- 40S ribosomal protein S24-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s9
- 40S ribosomal protein S9-A
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