J3_5DGV_073
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 5DGV|1|4|U|60, 5DGV|1|4|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DGV_073 not in the Motif Atlas
- Homologous match to J3_8P4V_024
- Geometric discrepancy: 0.0532
- The information below is about J3_8P4V_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
5DGV|1|4|A|44
5DGV|1|4|C|45
*
5DGV|1|4|G|58
5DGV|1|4|A|59
5DGV|1|4|U|60
5DGV|1|4|A|61
5DGV|1|4|C|62
5DGV|1|4|G|63
5DGV|1|4|U|64
*
5DGV|1|4|A|96
5DGV|1|4|A|97
5DGV|1|4|U|98
5DGV|1|4|C|99
5DGV|1|4|U|100
Current chains
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain N5
- 60S ribosomal protein L25
- Chain O5
- 60S ribosomal protein L35-A
- Chain O7
- 60S ribosomal protein L37-A
- Chain O9
- 60S ribosomal protein L39
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