J3_8P4V_024

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

AC*GAUACGU*AAUCU

Length

14 nucleotides

Bulged bases

8P4V|1|4|U|60, 8P4V|1|4|C|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38265.2

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

8

Unit IDs

8P4V|1|4|A|44
8P4V|1|4|C|45
*
8P4V|1|4|G|58
8P4V|1|4|A|59
8P4V|1|4|U|60
8P4V|1|4|A|61
8P4V|1|4|C|62
8P4V|1|4|G|63
8P4V|1|4|U|64
*
8P4V|1|4|A|96
8P4V|1|4|A|97
8P4V|1|4|U|98
8P4V|1|4|C|99
8P4V|1|4|U|100

Current chains

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain 8

60S ribosomal protein L25

Chain AI

60S ribosomal protein L35-A

Chain AK

60S ribosomal protein L37-A

Chain AM

60S ribosomal protein L39