J3_5DM6_002

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAGCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

5DM6|1|X|G|686, 5DM6|1|X|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DM6_002 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1317

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5DM6|1|X|U|683
5DM6|1|X|G|684
5DM6|1|X|A|685
5DM6|1|X|G|686
5DM6|1|X|C|687
5DM6|1|X|U|688
5DM6|1|X|A|689
*
5DM6|1|X|U|773
5DM6|1|X|A|774
5DM6|1|X|G|775
*
5DM6|1|X|C|791
5DM6|1|X|G|792
5DM6|1|X|A|793
5DM6|1|X|A|794

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2