J3_5DM6_005

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

5DM6|1|X|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DM6_005 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.0835

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5DM6|1|X|C|1298
5DM6|1|X|G|1299
5DM6|1|X|U|1300
5DM6|1|X|A|1301
5DM6|1|X|A|1302
5DM6|1|X|G|1303
*
5DM6|1|X|C|1625
5DM6|1|X|G|1625|||A
5DM6|1|X|A|1626
*
5DM6|1|X|U|1639
5DM6|1|X|A|1640
5DM6|1|X|A|1641
5DM6|1|X|G|1642

Current chains

Chain X

23S ribosomal RNA

Nearby chains