J3_5DM6_010

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DM6_010 not in the Motif Atlas

Homologous match to J3_7A0S_012

Geometric discrepancy: 0.1568

The information below is about J3_7A0S_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20574.1

Basepair signature

cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

5DM6|1|X|C|2789
5DM6|1|X|A|2790
5DM6|1|X|C|2791
*
5DM6|1|X|G|2801
5DM6|1|X|G|2802
5DM6|1|X|U|2808
5DM6|1|X|A|2809
5DM6|1|X|A|2810
5DM6|1|X|G|2811
*
5DM6|1|X|C|2889
5DM6|1|X|G|2890
5DM6|1|X|A|2891
5DM6|1|X|G|2892
5DM6|1|X|G|2893

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32