J3_5DM6_012

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DM6_012 not in the Motif Atlas

Geometric match to J3_7A0S_001

Geometric discrepancy: 0.0733

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

5DM6|1|X|G|30
5DM6|1|X|C|31
*
5DM6|1|X|G|474
5DM6|1|X|U|475
5DM6|1|X|G|476
5DM6|1|X|A|477
5DM6|1|X|A|478
5DM6|1|X|A|479
5DM6|1|X|A|480
5DM6|1|X|G|481
*
5DM6|1|X|C|509
5DM6|1|X|C|510

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24