J3_5DM6_013
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAGAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 5DM6|1|X|G|504, 5DM6|1|X|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DM6_013 not in the Motif Atlas
- Homologous match to J3_7A0S_015
- Geometric discrepancy: 0.0735
- The information below is about J3_7A0S_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5DM6|1|X|G|30
5DM6|1|X|C|31
*
5DM6|1|X|G|474
5DM6|1|X|U|475
5DM6|1|X|G|476
5DM6|1|X|A|477
5DM6|1|X|A|478
5DM6|1|X|A|479
5DM6|1|X|A|480
5DM6|1|X|G|481
5DM6|1|X|A|482
5DM6|1|X|A|483
5DM6|1|X|C|484
*
5DM6|1|X|G|496
5DM6|1|X|A|497
5DM6|1|X|G|498
5DM6|1|X|U|499
5DM6|1|X|G|500
5DM6|1|X|A|501
5DM6|1|X|A|502
5DM6|1|X|A|503
5DM6|1|X|G|504
5DM6|1|X|A|505
5DM6|1|X|G|506
5DM6|1|X|A|507
5DM6|1|X|A|508
5DM6|1|X|C|509
5DM6|1|X|C|510
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L22
- Chain R
- 50S ribosomal protein L24
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