J3_5DM6_014
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUG*CGAUAGCGCAUAGUAC*GGAAAG
- Length
- 26 nucleotides
- Bulged bases
- 5DM6|1|X|U|34, 5DM6|1|X|U|448
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DM6_014 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.0777
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5DM6|1|X|C|32
5DM6|1|X|C|33
5DM6|1|X|U|34
5DM6|1|X|G|35
*
5DM6|1|X|C|445
5DM6|1|X|G|446
5DM6|1|X|A|447
5DM6|1|X|U|448
5DM6|1|X|A|449
5DM6|1|X|G|450
5DM6|1|X|C|451
5DM6|1|X|G|452
5DM6|1|X|C|453
5DM6|1|X|A|454
5DM6|1|X|U|456
5DM6|1|X|A|457
5DM6|1|X|G|458
5DM6|1|X|U|459
5DM6|1|X|A|460
5DM6|1|X|C|461
*
5DM6|1|X|G|468
5DM6|1|X|G|469
5DM6|1|X|A|470
5DM6|1|X|A|471
5DM6|1|X|A|472
5DM6|1|X|G|473
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L4
- Chain N
- 50S ribosomal protein L20
- Chain Q
- 50S ribosomal protein L23
- Chain R
- 50S ribosomal protein L24
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