J3_5DM6_021

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

5DM6|1|X|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DM6_021 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.0866

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

5DM6|1|X|U|1344
5DM6|1|X|C|1345
5DM6|1|X|G|1346
5DM6|1|X|G|1347
5DM6|1|X|G|1348
5DM6|1|X|A|1349
5DM6|1|X|C|1350
*
5DM6|1|X|G|1381
5DM6|1|X|A|1382
5DM6|1|X|C|1383
5DM6|1|X|A|1384
5DM6|1|X|G|1385
*
5DM6|1|X|C|1402
5DM6|1|X|A|1403

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L23