J3_5DOX_025

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5DOX|1|2a|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DOX_025 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0979

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5DOX|1|2a|C|826
5DOX|1|2a|U|827
5DOX|1|2a|A|828
5DOX|1|2a|G|829
*
5DOX|1|2a|C|857
5DOX|1|2a|G|858
5DOX|1|2a|A|859
5DOX|1|2a|A|860
5DOX|1|2a|G|861
*
5DOX|1|2a|C|868
5DOX|1|2a|G|869
5DOX|1|2a|U|870
5DOX|1|2a|U|871
5DOX|1|2a|A|872
5DOX|1|2a|A|873
5DOX|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8