3D structure

PDB id
5DOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5DOX_027 not in the Motif Atlas
Homologous match to J3_4LFB_003
Geometric discrepancy: 0.1336
The information below is about J3_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.4
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

5DOX|1|2a|U|943
5DOX|1|2a|G|944
5DOX|1|2a|G|945
5DOX|1|2a|A|946
*
5DOX|1|2a|U|1235
5DOX|1|2a|A|1236
5DOX|1|2a|C|1237
*
5DOX|1|2a|G|1337
5DOX|1|2a|G|1338
5DOX|1|2a|A|1339
5DOX|1|2a|A|1340

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2i
30S ribosomal protein S9
Chain 2m
30S ribosomal protein S13
Chain 2u
30S ribosomal protein Thx

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.5422 s
Application loaded.