J3_5DOX_033

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

5DOX|1|2a|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5DOX_033 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1341

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5DOX|1|2a|C|1237
5DOX|1|2a|A|1238
5DOX|1|2a|A|1239
5DOX|1|2a|U|1240
5DOX|1|2a|G|1241
*
5DOX|1|2a|C|1296
5DOX|1|2a|C|1297
5DOX|1|2a|C|1298
5DOX|1|2a|A|1299
5DOX|1|2a|G|1300
5DOX|1|2a|U|1301
5DOX|1|2a|U|1302
5DOX|1|2a|C|1303
*
5DOX|1|2a|G|1334
5DOX|1|2a|C|1335
5DOX|1|2a|C|1336
5DOX|1|2a|G|1337

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx