J3_5DOY_036
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 5DOY|1|1A|U|504, 5DOY|1|1A|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DOY_036 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0349
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
5DOY|1|1A|G|30
5DOY|1|1A|C|31
*
5DOY|1|1A|G|474
5DOY|1|1A|U|475
5DOY|1|1A|G|476
5DOY|1|1A|A|477
5DOY|1|1A|A|478
5DOY|1|1A|A|479
5DOY|1|1A|A|480
5DOY|1|1A|G|481
5DOY|1|1A|A|482
5DOY|1|1A|A|483
5DOY|1|1A|C|484
*
5DOY|1|1A|G|496
5DOY|1|1A|A|497
5DOY|1|1A|G|498
5DOY|1|1A|U|499
5DOY|1|1A|G|500
5DOY|1|1A|A|501
5DOY|1|1A|A|502
5DOY|1|1A|A|503
5DOY|1|1A|U|504
5DOY|1|1A|A|505
5DOY|1|1A|G|506
5DOY|1|1A|A|507
5DOY|1|1A|G|508
5DOY|1|1A|C|509
5DOY|1|1A|C|510
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1U
- 50S Ribosomal Protein L20
- Chain 1W
- 50S Ribosomal Protein L22
- Chain 1Y
- 50S Ribosomal Protein L24
Coloring options: