J3_5DOY_047
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 5DOY|1|1a|C|48, 5DOY|1|1a|A|50, 5DOY|1|1a|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5DOY_047 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0801
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5DOY|1|1a|G|46
5DOY|1|1a|C|47
5DOY|1|1a|C|48
5DOY|1|1a|U|49
5DOY|1|1a|A|50
5DOY|1|1a|A|51
5DOY|1|1a|G|52
*
5DOY|1|1a|U|359
5DOY|1|1a|A|360
5DOY|1|1a|G|361
5DOY|1|1a|G|362
5DOY|1|1a|A|363
5DOY|1|1a|A|364
5DOY|1|1a|U|365
5DOY|1|1a|C|366
5DOY|1|1a|U|367
*
5DOY|1|1a|A|393
5DOY|1|1a|G|394
5DOY|1|1a|C|395
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1l
- 30S Ribosomal Protein S12
- Chain 1p
- 30S Ribosomal Protein S16
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