3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
5E7K|1|13|U|1240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5E7K_008 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1097
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

5E7K|1|13|C|1237
5E7K|1|13|A|1238
5E7K|1|13|A|1239
5E7K|1|13|U|1240
5E7K|1|13|G|1241
*
5E7K|1|13|C|1296
5E7K|1|13|C|1297
5E7K|1|13|C|1298
5E7K|1|13|A|1299
5E7K|1|13|G|1300
5E7K|1|13|U|1301
5E7K|1|13|U|1302
5E7K|1|13|C|1303
*
5E7K|1|13|G|1334
5E7K|1|13|C|1335
5E7K|1|13|C|1336
5E7K|1|13|G|1337

Current chains

Chain 13
16S rRNA

Nearby chains

Chain 1F
30S ribosomal protein Thx
Chain 4I
30S ribosomal protein S13
Chain 6E
30S ribosomal protein S7

Coloring options:


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