3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
Length
28 nucleotides
Bulged bases
5E7K|1|1H|U|504, 5E7K|1|1H|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5E7K_063 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.1374
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

5E7K|1|1H|G|30
5E7K|1|1H|C|31
*
5E7K|1|1H|G|474
5E7K|1|1H|U|475
5E7K|1|1H|G|476
5E7K|1|1H|A|477
5E7K|1|1H|A|478
5E7K|1|1H|A|479
5E7K|1|1H|A|480
5E7K|1|1H|G|481
5E7K|1|1H|A|482
5E7K|1|1H|A|483
5E7K|1|1H|C|484
*
5E7K|1|1H|G|496
5E7K|1|1H|A|497
5E7K|1|1H|G|498
5E7K|1|1H|U|499
5E7K|1|1H|G|500
5E7K|1|1H|A|501
5E7K|1|1H|A|502
5E7K|1|1H|A|503
5E7K|1|1H|U|504
5E7K|1|1H|A|505
5E7K|1|1H|G|506
5E7K|1|1H|A|507
5E7K|1|1H|G|508
5E7K|1|1H|C|509
5E7K|1|1H|C|510

Current chains

Chain 1H
23S rRNA

Nearby chains

Chain C8
50S ribosomal protein L20
Chain E8
50S ribosomal protein L22
Chain G8
50S ribosomal protein L24

Coloring options:


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