J3_5E81_041
3D structure
- PDB id
- 5E81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 5E81|1|14|U|504, 5E81|1|14|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5E81_041 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0642
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5E81|1|14|G|30
5E81|1|14|C|31
*
5E81|1|14|G|474
5E81|1|14|U|475
5E81|1|14|G|476
5E81|1|14|A|477
5E81|1|14|A|478
5E81|1|14|A|479
5E81|1|14|A|480
5E81|1|14|G|481
5E81|1|14|A|482
5E81|1|14|A|483
5E81|1|14|C|484
*
5E81|1|14|G|496
5E81|1|14|A|497
5E81|1|14|G|498
5E81|1|14|U|499
5E81|1|14|G|500
5E81|1|14|A|501
5E81|1|14|A|502
5E81|1|14|A|503
5E81|1|14|U|504
5E81|1|14|A|505
5E81|1|14|G|506
5E81|1|14|A|507
5E81|1|14|G|508
5E81|1|14|C|509
5E81|1|14|C|510
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 85
- 50S ribosomal protein L20
- Chain A5
- 50S ribosomal protein L22
- Chain C5
- 50S ribosomal protein L24
Coloring options: