J3_5EL4_038

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5EL4|1|13|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5EL4_038 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1414

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5EL4|1|13|C|990
5EL4|1|13|U|991
5EL4|1|13|U|992
5EL4|1|13|G|993
5EL4|1|13|A|994
5EL4|1|13|C|995
5EL4|1|13|A|996
5EL4|1|13|U|997
*
5EL4|1|13|A|1044
5EL4|1|13|C|1045
5EL4|1|13|A|1046
5EL4|1|13|G|1047
*
5EL4|1|13|C|1210
5EL4|1|13|U|1211
5EL4|1|13|U|1212
5EL4|1|13|A|1213
5EL4|1|13|C|1214
5EL4|1|13|G|1215

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 5I

30S ribosomal protein S14 type Z