J3_5EL5_039

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

5EL5|1|14|U|504, 5EL5|1|14|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5EL5_039 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0988

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5EL5|1|14|G|30
5EL5|1|14|C|31
*
5EL5|1|14|G|474
5EL5|1|14|U|475
5EL5|1|14|G|476
5EL5|1|14|A|477
5EL5|1|14|A|478
5EL5|1|14|A|479
5EL5|1|14|A|480
5EL5|1|14|G|481
5EL5|1|14|A|482
5EL5|1|14|A|483
5EL5|1|14|C|484
*
5EL5|1|14|G|496
5EL5|1|14|A|497
5EL5|1|14|G|498
5EL5|1|14|U|499
5EL5|1|14|G|500
5EL5|1|14|A|501
5EL5|1|14|A|502
5EL5|1|14|A|503
5EL5|1|14|U|504
5EL5|1|14|A|505
5EL5|1|14|G|506
5EL5|1|14|A|507
5EL5|1|14|G|508
5EL5|1|14|C|509
5EL5|1|14|C|510

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 85

50S ribosomal protein L20

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24