J3_5EL6_017
3D structure
- PDB id
- 5EL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 5EL6|1|1G|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5EL6_017 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.1347
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5EL6|1|1G|C|826
5EL6|1|1G|U|827
5EL6|1|1G|A|828
5EL6|1|1G|G|829
*
5EL6|1|1G|C|857
5EL6|1|1G|G|858
5EL6|1|1G|A|859
5EL6|1|1G|A|860
5EL6|1|1G|G|861
*
5EL6|1|1G|C|868
5EL6|1|1G|G|869
5EL6|1|1G|U|870
5EL6|1|1G|U|871
5EL6|1|1G|A|872
5EL6|1|1G|A|873
5EL6|1|1G|G|874
Current chains
- Chain 1G
- 16S rRNA
Nearby chains
- Chain 12
- 30S ribosomal protein S2
- Chain 42
- 30S ribosomal protein S5
- Chain 72
- 30S ribosomal protein S8
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