J3_5EL6_038
3D structure
- PDB id
- 5EL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 5EL6|1|13|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5EL6_038 not in the Motif Atlas
- Homologous match to J3_4LFB_012
- Geometric discrepancy: 0.112
- The information below is about J3_4LFB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74074.1
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5EL6|1|13|U|672
5EL6|1|13|G|673
*
5EL6|1|13|C|717
5EL6|1|13|G|718
5EL6|1|13|C|719
5EL6|1|13|C|720
5EL6|1|13|G|721
5EL6|1|13|A|722
5EL6|1|13|U|723
5EL6|1|13|G|724
5EL6|1|13|G|725
*
5EL6|1|13|C|732
5EL6|1|13|A|733
5EL6|1|13|G|734
Current chains
- Chain 13
- 16S rRNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 2I
- 30S ribosomal protein S11
- Chain 4K
- mRNA
- Chain 5E
- 30S ribosomal protein S6
- Chain 6I
- 30S ribosomal protein S15
- Chain 9I
- 30S ribosomal protein S18
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