J3_5EL6_043

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

5EL6|1|14|U|504, 5EL6|1|14|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5EL6_043 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0625

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

5EL6|1|14|G|30
5EL6|1|14|C|31
*
5EL6|1|14|G|474
5EL6|1|14|U|475
5EL6|1|14|G|476
5EL6|1|14|A|477
5EL6|1|14|A|478
5EL6|1|14|A|479
5EL6|1|14|A|480
5EL6|1|14|G|481
5EL6|1|14|A|482
5EL6|1|14|A|483
5EL6|1|14|C|484
*
5EL6|1|14|G|496
5EL6|1|14|A|497
5EL6|1|14|G|498
5EL6|1|14|U|499
5EL6|1|14|G|500
5EL6|1|14|A|501
5EL6|1|14|A|502
5EL6|1|14|A|503
5EL6|1|14|U|504
5EL6|1|14|A|505
5EL6|1|14|G|506
5EL6|1|14|A|507
5EL6|1|14|G|508
5EL6|1|14|C|509
5EL6|1|14|C|510

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 85

50S ribosomal protein L20

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24