J3_5EL7_024

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

5EL7|1|1G|U|1240, 5EL7|1|1G|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5EL7_024 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.154

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5EL7|1|1G|C|1237
5EL7|1|1G|A|1238
5EL7|1|1G|A|1239
5EL7|1|1G|U|1240
5EL7|1|1G|G|1241
*
5EL7|1|1G|C|1296
5EL7|1|1G|C|1297
5EL7|1|1G|C|1298
5EL7|1|1G|A|1299
5EL7|1|1G|G|1300
5EL7|1|1G|U|1301
5EL7|1|1G|U|1302
5EL7|1|1G|C|1303
*
5EL7|1|1G|G|1334
5EL7|1|1G|C|1335
5EL7|1|1G|C|1336
5EL7|1|1G|G|1337

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 1B

30S ribosomal protein Thx

Chain 4A

30S ribosomal protein S13

Chain 62

30S ribosomal protein S7