J3_5F8K_028

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5F8K|1|2a|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5F8K_028 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0755

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

5F8K|1|2a|C|826
5F8K|1|2a|U|827
5F8K|1|2a|A|828
5F8K|1|2a|G|829
*
5F8K|1|2a|C|857
5F8K|1|2a|G|858
5F8K|1|2a|A|859
5F8K|1|2a|A|860
5F8K|1|2a|G|861
*
5F8K|1|2a|C|868
5F8K|1|2a|G|869
5F8K|1|2a|U|870
5F8K|1|2a|U|871
5F8K|1|2a|A|872
5F8K|1|2a|A|873
5F8K|1|2a|G|874

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8