J3_5F8K_070

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5F8K|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5F8K_070 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.153

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5F8K|1|2a|C|990
5F8K|1|2a|U|991
5F8K|1|2a|U|992
5F8K|1|2a|G|993
5F8K|1|2a|A|994
5F8K|1|2a|C|995
5F8K|1|2a|A|996
5F8K|1|2a|U|997
*
5F8K|1|2a|A|1044
5F8K|1|2a|C|1045
5F8K|1|2a|A|1046
5F8K|1|2a|G|1047
*
5F8K|1|2a|C|1210
5F8K|1|2a|U|1211
5F8K|1|2a|U|1212
5F8K|1|2a|A|1213
5F8K|1|2a|C|1214
5F8K|1|2a|G|1215

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z