J3_5FCI_017

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

5FCI|1|2|A|1217, 5FCI|1|2|G|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5FCI_017 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1413

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5FCI|1|2|C|1215
5FCI|1|2|C|1216
5FCI|1|2|A|1217
5FCI|1|2|G|1218
5FCI|1|2|A|1219
5FCI|1|2|C|1220
*
5FCI|1|2|G|1263
5FCI|1|2|G|1264
5FCI|1|2|G|1265
5FCI|1|2|U|1266
5FCI|1|2|G|1267
*
5FCI|1|2|U|1442
5FCI|1|2|U|1443
5FCI|1|2|A|1444
5FCI|1|2|G|1445
5FCI|1|2|A|1446
5FCI|1|2|C|1447
5FCI|1|2|G|1448

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C0

40S ribosomal protein S10-A

Chain D9

40S ribosomal protein S29-A

Chain E1

40S ribosomal protein S31