J3_5FCJ_037
3D structure
- PDB id
- 5FCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 5FCJ|1|6|G|1199, 5FCJ|1|6|G|1201, 5FCJ|1|6|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FCJ_037 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.0679
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5FCJ|1|6|C|1180
5FCJ|1|6|U|1181
5FCJ|1|6|U|1182
5FCJ|1|6|A|1183
5FCJ|1|6|A|1184
5FCJ|1|6|U|1185
5FCJ|1|6|U|1186
5FCJ|1|6|U|1187
*
5FCJ|1|6|G|1198
5FCJ|1|6|G|1199
5FCJ|1|6|G|1200
5FCJ|1|6|G|1201
5FCJ|1|6|A|1202
5FCJ|1|6|A|1203
5FCJ|1|6|A|1204
5FCJ|1|6|C|1205
5FCJ|1|6|U|1206
5FCJ|1|6|C|1207
5FCJ|1|6|A|1208
5FCJ|1|6|C|1209
*
5FCJ|1|6|G|1454
5FCJ|1|6|G|1455
5FCJ|1|6|C|1456
5FCJ|1|6|C|1457
5FCJ|1|6|G|1458
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c5
- 40S ribosomal protein S15
- Chain c8
- 40S ribosomal protein S18-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
- Chain e1
- Ubiquitin-40S ribosomal protein S31
- Chain sM
- Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1
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