J3_5FDV_050
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 5FDV|1|1a|A|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FDV_050 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.0874
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5FDV|1|1a|C|586
5FDV|1|1a|G|587
5FDV|1|1a|G|588
*
5FDV|1|1a|C|651
5FDV|1|1a|U|652
5FDV|1|1a|A|653
5FDV|1|1a|G|654
5FDV|1|1a|A|655
*
5FDV|1|1a|U|751
5FDV|1|1a|G|752
5FDV|1|1a|A|753
5FDV|1|1a|C|754
5FDV|1|1a|G|755
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1h
- 30S ribosomal protein S8
- Chain 1l
- 30S ribosomal protein S12
- Chain 1o
- 30S ribosomal protein S15
- Chain 1q
- 30S ribosomal protein S17
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