J3_5FLX_005
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FLX_005 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.1656
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5FLX|1|1|U|1225
5FLX|1|1|G|1226
5FLX|1|1|G|1227
5FLX|1|1|A|1228
*
5FLX|1|1|U|1530
5FLX|1|1|A|1531
5FLX|1|1|C|1532
*
5FLX|1|1|G|1638
5FLX|1|1|G|1639
5FLX|1|1|A|1640
5FLX|1|1|A|1641
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain F
- 40S RIBOSOMAL PROTEIN S5
- Chain Q
- 40S RIBOSOMAL PROTEIN S16
- Chain S
- 40S RIBOSOMAL PROTEIN S18
- Chain T
- 40S RIBOSOMAL PROTEIN S19
- Chain z
- Internal ribosome entry site; IRES
Coloring options: