J3_5FLX_015
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FLX_015 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.333
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5FLX|1|1|U|1340
5FLX|1|1|C|1341
5FLX|1|1|U|1342
5FLX|1|1|U|1343
5FLX|1|1|A|1344
5FLX|1|1|G|1345
*
5FLX|1|1|C|1384
5FLX|1|1|G|1385
5FLX|1|1|A|1386
5FLX|1|1|G|1387
5FLX|1|1|A|1388
5FLX|1|1|C|1389
*
5FLX|1|1|G|1481
5FLX|1|1|C|1482
5FLX|1|1|A|1483
5FLX|1|1|A|1484
5FLX|1|1|U|1485
5FLX|1|1|A|1486
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain C
- 40S RIBOSOMAL PROTEIN S2
- Chain D
- 40S RIBOSOMAL PROTEIN S3
- Chain Q
- 40S RIBOSOMAL PROTEIN S16
- Chain R
- 40S RIBOSOMAL PROTEIN S17
- Chain U
- 40S RIBOSOMAL PROTEIN S20
- Chain d
- 40S RIBOSOMAL PROTEIN S29
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