J3_5FLX_016
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5FLX_016 not in the Motif Atlas
- Homologous match to J3_8P9A_081
- Geometric discrepancy: 0.2268
- The information below is about J3_8P9A_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.4
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5FLX|1|1|U|1350
5FLX|1|1|G|1351
*
5FLX|1|1|U|1360
5FLX|1|1|G|1361
5FLX|1|1|U|1362
5FLX|1|1|C|1363
*
5FLX|1|1|G|1375
5FLX|1|1|A|1376
5FLX|1|1|U|1377
5FLX|1|1|A|1378
5FLX|1|1|A|1379
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain A
- 40S RIBOSOMAL PROTEIN SA
- Chain C
- 40S RIBOSOMAL PROTEIN S2
- Chain R
- 40S RIBOSOMAL PROTEIN S17
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