J3_5GAD_005

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5GAD|1|A|C|1607, 5GAD|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5GAD_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.339

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5GAD|1|A|C|1306
5GAD|1|A|A|1307
5GAD|1|A|A|1308
5GAD|1|A|G|1309
*
5GAD|1|A|C|1605
5GAD|1|A|C|1606
5GAD|1|A|C|1607
5GAD|1|A|A|1608
5GAD|1|A|A|1609
5GAD|1|A|A|1610
5GAD|1|A|C|1611
*
5GAD|1|A|G|1620
5GAD|1|A|U|1621
5GAD|1|A|G|1622

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34