J3_5GAE_001

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5GAE|1|A|U|686, 5GAE|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5GAE_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3334

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5GAE|1|A|U|683
5GAE|1|A|G|684
5GAE|1|A|A|685
5GAE|1|A|U|686
5GAE|1|A|C|687
5GAE|1|A|U|688
5GAE|1|A|A|689
*
5GAE|1|A|U|773
5GAE|1|A|G|774
5GAE|1|A|G|775
*
5GAE|1|A|C|791
5GAE|1|A|A|792
5GAE|1|A|A|793
5GAE|1|A|A|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain d

50S ribosomal protein L34