3D structure

PDB id
5GAE (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC in complex with a translocating SecYEG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.33 Å

Loop

Sequence
GGA*UUUAAAG*CAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5GAE_003 not in the Motif Atlas
Homologous match to J3_5J7L_040
Geometric discrepancy: 0.0926
The information below is about J3_5J7L_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28621.5
Basepair signature
cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
Number of instances in this motif group
7

Unit IDs

5GAE|1|A|G|1055
5GAE|1|A|G|1056
5GAE|1|A|A|1057
*
5GAE|1|A|U|1081
5GAE|1|A|U|1082
5GAE|1|A|U|1083
5GAE|1|A|A|1084
5GAE|1|A|A|1085
5GAE|1|A|A|1086
5GAE|1|A|G|1087
*
5GAE|1|A|C|1102
5GAE|1|A|A|1103
5GAE|1|A|C|1104

Current chains

Chain A
23S rRNA

Nearby chains

Chain I
50S ribosomal protein L10
Chain J
50S ribosomal protein L11
Chain f
50S ribosomal protein L36

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