J3_5GAF_005

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5GAF|1|A|C|1607, 5GAF|1|A|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5GAF_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.3391

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5GAF|1|A|C|1306
5GAF|1|A|A|1307
5GAF|1|A|A|1308
5GAF|1|A|G|1309
*
5GAF|1|A|C|1605
5GAF|1|A|C|1606
5GAF|1|A|C|1607
5GAF|1|A|A|1608
5GAF|1|A|A|1609
5GAF|1|A|A|1610
5GAF|1|A|C|1611
*
5GAF|1|A|G|1620
5GAF|1|A|U|1621
5GAF|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34