J3_5GAF_016

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5GAF_016 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.082

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5GAF|1|A|G|1424
5GAF|1|A|G|1425
5GAF|1|A|G|1426
5GAF|1|A|A|1427
5GAF|1|A|C|1428
5GAF|1|A|G|1429
*
5GAF|1|A|C|1564
5GAF|1|A|C|1565
*
5GAF|1|A|G|1568
5GAF|1|A|A|1569
5GAF|1|A|A|1570
5GAF|1|A|A|1571
5GAF|1|A|A|1572
5GAF|1|A|G|1573
5GAF|1|A|C|1574

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2