J3_5GAH_012
3D structure
- PDB id
- 5GAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNC in complex with SRP with detached NG domain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 5GAH|1|A|A|504, 5GAH|1|A|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5GAH_012 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1257
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5GAH|1|A|G|30
5GAH|1|A|C|31
*
5GAH|1|A|G|474
5GAH|1|A|C|475
5GAH|1|A|G|476
5GAH|1|A|A|477
5GAH|1|A|A|478
5GAH|1|A|A|479
5GAH|1|A|A|480
5GAH|1|A|G|481
5GAH|1|A|A|482
5GAH|1|A|A|483
5GAH|1|A|C|484
*
5GAH|1|A|G|496
5GAH|1|A|A|497
5GAH|1|A|G|498
5GAH|1|A|U|499
5GAH|1|A|G|500
5GAH|1|A|A|501
5GAH|1|A|A|502
5GAH|1|A|A|503
5GAH|1|A|A|504
5GAH|1|A|A|505
5GAH|1|A|G|506
5GAH|1|A|A|507
5GAH|1|A|A|508
5GAH|1|A|C|509
5GAH|1|A|C|510
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain R
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L22
- Chain V
- 50S ribosomal protein L24
- Chain i
- Signal recognition particle protein Ffh
Coloring options: