J3_5GAK_004

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

5GAK|1|1|A|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5GAK_004 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.4366

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

5GAK|1|1|G|1230
5GAK|1|1|A|1231
5GAK|1|1|C|1232
*
5GAK|1|1|G|1256
5GAK|1|1|C|1257
5GAK|1|1|U|1258
5GAK|1|1|A|1259
5GAK|1|1|A|1260
5GAK|1|1|G|1261
5GAK|1|1|G|1262
*
5GAK|1|1|C|1277
5GAK|1|1|A|1278
5GAK|1|1|C|1279

Current chains

Chain 1

25S rRNA

Nearby chains