3D structure

PDB id
5GAK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.88 Å

Loop

Sequence
UC*GAGGACUGCG*CAAGGA
Length
18 nucleotides
Bulged bases
5GAK|1|1|A|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5GAK_014 not in the Motif Atlas
Homologous match to J3_8P9A_048
Geometric discrepancy: 0.1663
The information below is about J3_8P9A_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83726.1
Basepair signature
cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

5GAK|1|1|U|502
5GAK|1|1|C|503
*
5GAK|1|1|G|588
5GAK|1|1|A|589
5GAK|1|1|G|590
5GAK|1|1|G|591
5GAK|1|1|A|592
5GAK|1|1|C|593
5GAK|1|1|U|594
5GAK|1|1|G|595
5GAK|1|1|C|596
5GAK|1|1|G|597
*
5GAK|1|1|C|606
5GAK|1|1|A|607
5GAK|1|1|A|608
5GAK|1|1|G|609
5GAK|1|1|G|610
5GAK|1|1|A|611

Current chains

Chain 1
25S rRNA

Nearby chains

Chain G
60S ribosomal protein L4-A
Chain I
60S ribosomal protein L6-A
Chain J
60S ribosomal protein L7-A
Chain g
60S ribosomal protein L32

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4078 s