J3_5GAK_019

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5GAK_019 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1452

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5GAK|1|1|A|1654
5GAK|1|1|G|1655
5GAK|1|1|A|1656
5GAK|1|1|C|1657
5GAK|1|1|G|1658
*
5GAK|1|1|C|1791
5GAK|1|1|C|1792
*
5GAK|1|1|G|1796
5GAK|1|1|A|1797
5GAK|1|1|A|1798
5GAK|1|1|A|1799
5GAK|1|1|A|1800
5GAK|1|1|U|1801

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L43-A

Chain E

60S ribosomal protein L2-A

Chain i

60S ribosomal protein L34-A