3D structure

PDB id
5GAK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.88 Å

Loop

Sequence
GUC*GCCUAUCGAUCC*GGUGCC
Length
21 nucleotides
Bulged bases
5GAK|1|1|C|2797
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5GAK_021 not in the Motif Atlas
Homologous match to J3_8C3A_056
Geometric discrepancy: 0.1403
The information below is about J3_8C3A_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_27903.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
Number of instances in this motif group
5

Unit IDs

5GAK|1|1|G|2651
5GAK|1|1|U|2652
5GAK|1|1|C|2653
*
5GAK|1|1|G|2754
5GAK|1|1|C|2755
5GAK|1|1|C|2756
5GAK|1|1|U|2757
5GAK|1|1|A|2758
5GAK|1|1|U|2759
5GAK|1|1|C|2760
5GAK|1|1|G|2761
5GAK|1|1|A|2762
5GAK|1|1|U|2763
5GAK|1|1|C|2764
5GAK|1|1|C|2765
*
5GAK|1|1|G|2793
5GAK|1|1|G|2794
5GAK|1|1|U|2795
5GAK|1|1|G|2796
5GAK|1|1|C|2797
5GAK|1|1|C|2798

Current chains

Chain 1
25S rRNA

Nearby chains

Chain C
60S ribosomal protein L42-A
Chain S
60S ribosomal protein L18-A
Chain V
60S ribosomal protein L21-A
Chain c
60S ribosomal protein L28
Chain q
Eukaryotic translation initiation factor 5A-1

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1369 s