J3_5H5U_018

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5H5U|1|h|U|871, 5H5U|1|h|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5H5U_018 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0656

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5H5U|1|h|C|826
5H5U|1|h|U|827
5H5U|1|h|U|828
5H5U|1|h|G|829
*
5H5U|1|h|C|857
5H5U|1|h|G|858
5H5U|1|h|G|859
5H5U|1|h|A|860
5H5U|1|h|G|861
*
5H5U|1|h|C|868
5H5U|1|h|G|869
5H5U|1|h|U|870
5H5U|1|h|U|871
5H5U|1|h|A|872
5H5U|1|h|A|873
5H5U|1|h|G|874

Current chains

Chain h

16S rRNA

Nearby chains

Chain 2

30S ribosomal protein S21

Chain i

30S ribosomal protein S2

Chain o

30S ribosomal protein S8