J3_5H5U_027

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

5H5U|1|h|U|1240, 5H5U|1|h|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5H5U_027 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1101

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5H5U|1|h|C|1237
5H5U|1|h|A|1238
5H5U|1|h|A|1239
5H5U|1|h|U|1240
5H5U|1|h|G|1241
*
5H5U|1|h|C|1296
5H5U|1|h|G|1297
5H5U|1|h|U|1298
5H5U|1|h|A|1299
5H5U|1|h|G|1300
5H5U|1|h|U|1301
5H5U|1|h|C|1302
5H5U|1|h|C|1303
*
5H5U|1|h|G|1334
5H5U|1|h|U|1335
5H5U|1|h|C|1336
5H5U|1|h|G|1337

Current chains

Chain h

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S7

Chain t

30S ribosomal protein S13