J3_5H5U_034

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

5H5U|1|h|C|48, 5H5U|1|h|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5H5U_034 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0801

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5H5U|1|h|G|46
5H5U|1|h|C|47
5H5U|1|h|C|48
5H5U|1|h|U|49
5H5U|1|h|A|50
5H5U|1|h|A|51
5H5U|1|h|C|52
*
5H5U|1|h|G|359
5H5U|1|h|G|360
5H5U|1|h|G|361
5H5U|1|h|G|362
5H5U|1|h|A|363
5H5U|1|h|A|364
5H5U|1|h|U|365
5H5U|1|h|A|366
5H5U|1|h|U|367
*
5H5U|1|h|A|393
5H5U|1|h|G|394
5H5U|1|h|C|395

Current chains

Chain h

16S rRNA

Nearby chains

Chain s

30S ribosomal protein S12

Chain w

30S ribosomal protein S16